Prof. Dr. Pemra Özbek Sarıca’ya Sabiotek Proje Ödülü
Marmara Üniversitesi Biyomühendislik Bölümü öğretim üyesi ve Hesaplamalı Biyoloji ve Biyoinformatik Araştırma Grubu lideri Prof. Dr. Pemra Özbek Sarıca, Sabiotek alanında yürüttüğü yüksek bütçeli proje ile ödüle layık görülmüştür.
Unravelling the Allosteric Communication Mechanisms in TCR-pMHC using MD Simulations
New Server: ProsNex
New software: gRINN
We present a software for interaction energy based analysis fo protein molecular simulation trajectories.
Sequence-structure-function relationships in class I MHC: a local frustration perspective
Minimally-frustrated and conserved positions within the HLA structure
Elucidating the leaching effect of micro/nanoplastics on the binding, structural, and oxidative characteristics of bovine serum albumin, and impact on cytotoxicity and oxidative stress in the human lung cancer cell line, A549
NOTICES & EVENTS
- New Publication on 'Binding Affinity and Interaction Mechanism of Chlorhexidine with Lysozyme: Insights from Surface Plasmon Resonance, Molecular Docking, and Molecular Dynamics Simulations'
- New Publication on 'Elucidating the leaching effect of micro-/nano-plastics on the binding, structural, and oxidative characteristics of bovine serum albumin and its impact on cytotoxicity and oxidative stress in the human lung cancer cell line A549'
- New Publication on 'Elucidation of the Binding Interaction between β‐sitosterol and Lysozyme using Molecular Docking, Molecular Dynamics and Surface Plasmon Resonance Analysis'
- New publication on 'Antivirulence therapy: type IV pilus as a druggable target for bacterial infections'
- New Publication on 'Surface plasmon resonance, molecular docking, and molecular dynamics simulation studies of lysozyme interaction with tannic acid'
- New Publication on 'Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline'
- New Publication on 'SVM-DO: identification of tumor-discriminating mRNA signatures via support vector machines supported by Disease Ontology'
- New Publication on Attenuation of Type IV pili activity by natural products
- New Publication on Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes‐associated HLA‐B39 allotypes
- NEW TUBITAK 2209 PROJECT: Karbapenem hidroliz eden OXA enzimlerini hedefleyen ilaç tasarımı
- NEW TUBITAK 1001 PROJECT : Identification of common inhibitors against D-class beta-lactamases in ESKAPE pathogens
- New Publication on A review on the mechanistic details of OXA enzymes of ESKAPE pathogens
- New Publication on Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach
- New Publication on How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study
- New Publication on Assessment of 13 in silico pathogenicity methods on cancer-related variants
